Dr. Huaijun Zhou has published a total of 78 peer-reviewed papers, one book chapter and 116 peer-reviewed abstract and/or meeting proceedings. Here are his representative 14 publications:

Zar Mon, K. K., P. Saelao, M. M. Halstead, G. Chanthavixay, H.-C. Chang, L. Garas, E. A Maga and H. Zhou. 2016. Salmonella enterica serovars Enteritidis infection alters the indigenous microbiota diversity in young layer chicks. Front. Vet. Sci. – Veterinary Infectious Diseases. 2:61. doi: 10.3389/fvets.2015.00061.

Li J, Li R, Wang Y, Hu X, Zhao Y, Li L, Feng C, Gu X, Liang F, Lamont S, Hu S, Zhou H*, Li N. 2015. Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq. BMC Genomics, 16 :851 (23 October 2015)

Kim, T.H, H. Zhou. 2015. Functional Analysis of Chicken IRF7 in Response to dsRNA Analog Poly(I:C) by Integrating Overexpression and Knockdown: 10.1371/journal.pone.0133450.

Schmid M. et al. H. Zhou. 2015.Third Report on Chicken Genes and Chromosomes.  Cytogenet Genome Res 145:78-179 (DOI:10.1159/000430927).

Leif, A. et al. H. Zhou, The FAANG Consortium.  2015. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology 16:57. DOI: 10.1186/s13059-015-0622-4

Abernathy, J., Li, X., Jia, X., Chou, W., Lamont, S.J., Crooijmans, R., and Zhou, H. 2014. Copy number variation in Fayoumi and Leghorn chickens analyzed using array comparative genomic hybridization. Animal Genetics. doi: 10.1111/age.12141.

Wang Y, Lupiani B, Reddy S, S. J. Lamont, Zhou H. 2014. RNA-seq analysis revealed novel genes and signaling pathway associated with disease resistance to avian influenza virus infection in chickens. Poultry Science. 93(2):485-93. doi: 10.3382/ps.2013-03557.

Wang, Y., V. Brahmakshatriya, B. Lupiani, S. M Reddy, B. Soibam, A. L Benham, P. Gunaratne, H.Liu, M. Trakooljul, N. Ing, R. Okimoto and H. Zhou 2012. Integrated Analysis of microRNA Expression and mRNA Transcriptome in Lungs of Avian Influenza Virus Infected Broilers. BMC Genomics 13:278 (Highly assessed)

Wang Y, N. Ghaffari, C. D. Johnson, U. M. Braga-Neto, H. Wang, R. Chen, H. Zhou. 2011 Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. BMC Bioinformatics 12: doi:10.1186/1471-2105-12-S10-S5.

Li X., C. L. Swaggerty, M. H. Kogut, H. Chiang, Y. Wang, K. J. Genovese, H. He, H. Zhou. 2010. Gene expression profiling of the local cecal response of genetic chicken lines that differ in their susceptibility to Campylobacter jejuni colonization. PLoS ONE 5(7): e11827. doi:10.1371/journal.pone.0011827

Wang Y., V. Brahmakshatriya, B. Lupiani, S. Reddy, B. Yoon, H. Zhu, P. Gunaratne, R. Chen, J. Wang, H. Zhou. 2009. Identification of differentially expressed microRNAs In chicken lung and trachea with avian influenza virus infection by Solexa Sequencer. BMC Genomics 10:512. (Highly assessed)

Chiang, H.I., C. Swaggerty, M. Kogut, S. Dowd, X. Li, I. Pevzner, and H. Zhou. 2008. Gene expression profiling in chicken heterophils with Salmonella enteritidis stimulation using a chicken 44K Agilent microarray. BMC Genomics 9:526.

Li, X.Y, H.I. Chiang, J. Zhu, S. Dowd and H. Zhou. 2008. Characterization of newly developed chicken 44K Agilent microarray. BMC Genomics 9:60. (Highly assessed)

Wong, G. K., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Li, R., Zheng, H., Lin, W., Li, G., Wang, X., Zhao, W., Li, J. Ye, C., Dai, M., Ruan, J., Zhou, Y., Li, Y., He, X., Huang, X., Tong, W., Chen, J., Ye, J., Chen, C., Wei, N., Dong, L., Lan, F., Sun, Y., Yang, Z., Yu, Y., Huang, Y., He, D., Xi, Y., Wei, D., Qi, Q., Li, W., Shi,,J., Wang, M., Xie, F., Zhang, X., Wang, P., Zhao, Y., Li, N., Yang, N., Dong, W., Hu, S., Zeng C., Zheng, W., Hao, B., Hillier, L. W., Yang, S. P., Warren, W. C., Wilson, R. K., Brandstrom, M., Ellegren, H., Crooijmans, R. P., van der Poel, J. J., Bovenhuis, H., Groenen, M. A., Ovcharenko, I., Gordon, L., Stubbs, L., Lucas, S., Glavina, T., Aerts, A., Kaiser, P., Rothwell, L., Young, J. R., Rogers, S., Walker, B. A., van Hateren, A., Kaufman, J., Bumstead, N., Lamont, S. J., Zhou, H., Hocking, P. M., Morrice, D., de Koning, D. J., Law, A., Bartley, N., Burt, D. W., Hunt, H., Cheng, H. H., Gunnarsson, U., Wahlberg, P., Andersson, L., Kindlund, E., Tammi, M., Andersson, T. B., Webber, C., Ponting, C. P., Overton, I. M., Boardman, P. E., Tang, H., Hubbard, S. J., Wilson, S. A., Yu, J., and Yang, H.  2004.  A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.  Nature 432:717-722.